JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALC_chr14_87928014_87998182	0/0	c0002	2058	90	7	21	43	6	13	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0003	2058	23	1	15	0	5	2	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0004	2058	22	2	0	19	0	1	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	1/0	c0005	2058	20	5	0	14	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0006	2058	18	17	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0007	2058	12	0	0	12	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0008	2058	11	1	1	7	0	2	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0009	2058	7	0	2	3	1	1	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0010	2058	6	6	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0011	2058	5	5	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0012	2058	4	4	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0013	2058	4	4	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0014	2058	2	2	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0015	2058	2	2	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0016	2058	2	0	0	0	0	2	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0017	2058	1	0	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0018	2058	1	0	0	0	0	1	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0019	2058	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0020	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0021	2058	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0022	2058	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0023	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0024	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0025	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0026	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0027	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0028	2058	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0029	2058	1	0	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0030	2058	1	0	0	1	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0031	2058	1	1	0	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALC_chr14_87928014_87998182	0/0	c0032	2058	1	0	1	0	0	0	copy fasta	GALC	chr14	87928014	87998182
GALE_chr1_23790599_23805754	1/1	c0001	1047	395	81	82	174	18	38	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0002	1047	5	5	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0003	1047	2	2	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0004	1047	2	0	0	2	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0005	1047	1	0	1	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0006	1047	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0007	1047	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0008	1047	1	0	1	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0009	1047	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALE_chr1_23790599_23805754	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	GALE	chr1	23790599	23805754
GALK1_chr17_75752894_75770192	1/1	c0001	1179	416	80	82	193	18	41	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0002	1179	11	9	2	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0003	1179	7	0	0	7	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0004	1179	4	0	0	4	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0005	1179	3	3	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0006	1179	2	2	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0007	1179	2	0	2	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0008	1179	2	0	0	0	0	2	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0009	1179	1	0	0	1	0	0	copy fasta	GALK1	chr17	75752894	75770192