JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALK1_chr17_75752894_75770192	0/0	c0010	1179	1	1	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0011	1179	1	0	0	1	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0012	1179	1	0	0	0	0	1	copy fasta	GALK1	chr17	75752894	75770192
GALK1_chr17_75752894_75770192	0/0	c0013	1179	1	1	0	0	0	0	copy fasta	GALK1	chr17	75752894	75770192
GALK2_chr15_49165247_49336882	1/1	c0001	1377	266	56	41	125	10	32	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0002	1377	75	22	15	14	6	18	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0003	1377	3	3	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0004	1377	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0006	1377	1	1	0	0	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALK2_chr15_49165247_49336882	0/0	c0007	1377	1	0	0	1	0	0	copy fasta	GALK2	chr15	49165247	49336882
GALM_chr2_38661114_38739765	1/1	c0001	1029	233	51	49	97	7	27	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	c0002	1029	80	29	8	29	1	13	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	c0003	1029	12	11	1	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	c0004	1029	2	2	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALM_chr2_38661114_38739765	0/0	c0005	1029	1	1	0	0	0	0	copy fasta	GALM	chr2	38661114	38739765
GALNS_chr16_88808734_88861947	1/0	c0001	1569	176	33	51	56	10	25	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0002	1569	105	6	20	65	5	9	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/1	c0003	1569	20	1	9	6	0	3	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0004	1569	18	2	0	14	0	2	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0005	1569	11	11	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0006	1569	10	10	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0007	1569	7	7	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0008	1569	7	0	2	0	2	3	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0009	1569	6	6	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0010	1569	6	1	0	5	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0011	1569	5	0	0	4	1	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0012	1569	4	4	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0013	1569	4	4	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0014	1569	4	0	0	4	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0015	1569	4	4	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0016	1569	2	2	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0017	1569	2	1	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0018	1569	2	0	2	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0019	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0020	1569	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0021	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0022	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0023	1569	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0024	1569	1	0	1	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0025	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0026	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0027	1569	1	0	0	1	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0028	1569	1	1	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNS_chr16_88808734_88861947	0/0	c0029	1569	1	1	0	0	0	0	copy fasta	GALNS	chr16	88808734	88861947
GALNT10_chr5_154185733_154425984	1/1	c0001	1812	137	27	45	32	12	19	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0002	1812	57	27	13	11	0	6	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0003	1812	10	0	1	8	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0004	1812	8	8	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0005	1812	7	5	0	0	0	2	copy fasta	GALNT10	chr5	154185733	154425984