JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT10_chr5_154185733_154425984	0/0	c0006	1812	5	2	0	3	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0007	1812	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0008	1812	2	2	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0009	1812	1	0	0	0	1	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0010	1812	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0011	1812	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0012	1812	1	0	0	0	0	1	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0013	1812	1	0	1	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0014	1812	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0015	1812	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT10_chr5_154185733_154425984	0/0	c0016	1812	1	1	0	0	0	0	copy fasta	GALNT10	chr5	154185733	154425984
GALNT11_chr7_152020674_152127340	1/1	c0001	1827	260	76	49	101	8	24	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0002	1827	8	0	0	8	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0003	1827	8	6	2	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0004	1827	2	0	0	2	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0005	1827	2	2	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0006	1827	1	0	0	1	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0007	1827	1	0	1	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0008	1827	1	1	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT11_chr7_152020674_152127340	0/0	c0009	1827	1	1	0	0	0	0	copy fasta	GALNT11	chr7	152020674	152127340
GALNT12_chr9_98802670_98855081	1/1	c0001	1746	243	59	45	89	12	36	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0002	1746	54	11	12	29	1	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0003	1746	34	0	4	24	1	5	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0004	1746	11	10	1	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0005	1746	7	0	2	5	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0006	1746	6	6	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0007	1746	3	3	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0008	1746	3	2	1	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0009	1746	3	0	2	0	1	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0010	1746	1	0	1	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0011	1746	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0012	1746	1	0	0	0	0	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0013	1746	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0014	1746	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0015	1746	1	0	0	0	1	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0016	1746	1	0	0	0	0	1	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0017	1746	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0018	1746	1	0	0	1	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0019	1746	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0020	1746	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT12_chr9_98802670_98855081	0/0	c0021	1746	1	1	0	0	0	0	copy fasta	GALNT12	chr9	98802670	98855081
GALNT13_chr2_153866922_154458979	1/1	c0001	1671	213	57	56	60	10	28	copy fasta	GALNT13	chr2	153866922	154458979
GALNT13_chr2_153866922_154458979	0/0	c0002	1671	1	1	0	0	0	0	copy fasta	GALNT13	chr2	153866922	154458979
GALNT14_chr2_30905467_31143440	1/1	c0001	1659	151	57	32	43	4	13	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0002	1659	24	5	6	12	1	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0003	1659	24	6	5	7	2	4	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0004	1659	5	0	1	1	2	1	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0005	1659	5	4	0	0	0	1	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0006	1659	3	0	2	1	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0007	1659	2	1	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440