JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT14_chr2_30905467_31143440	0/0	c0008	1659	2	2	0	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0009	1659	2	1	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0010	1659	2	0	0	0	0	2	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0011	1659	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0012	1659	1	0	0	0	1	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0013	1659	1	1	0	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0014	1659	1	1	0	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0015	1659	1	0	0	0	0	1	copy fasta	GALNT14	chr2	30905467	31143440
GALNT14_chr2_30905467_31143440	0/0	c0016	1659	1	0	1	0	0	0	copy fasta	GALNT14	chr2	30905467	31143440
GALNT15_chr3_16169680_16235165	1/0	c0001	1920	153	10	27	87	11	17	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/1	c0002	1920	77	6	19	38	2	11	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0003	1920	45	2	3	31	0	9	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0004	1920	11	0	10	0	1	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0005	1920	9	2	4	0	0	3	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0006	1920	8	0	1	7	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0007	1920	8	8	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0008	1920	7	3	3	0	0	1	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0009	1920	6	5	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0010	1920	6	6	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0011	1920	4	4	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0012	1920	4	4	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0013	1920	4	0	3	0	1	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0014	1920	4	4	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0015	1920	4	4	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0016	1920	3	2	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0017	1920	3	0	2	0	1	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0018	1920	3	0	0	0	0	3	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0019	1920	3	3	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0020	1920	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0021	1920	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0022	1920	2	1	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0023	1920	2	2	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0024	1920	1	0	1	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0025	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0026	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0027	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0028	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0029	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0030	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0031	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0032	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0033	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0034	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0035	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0036	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0037	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0038	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0039	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0040	1920	1	1	0	0	0	0	copy fasta	GALNT15	chr3	16169680	16235165
GALNT15_chr3_16169680_16235165	0/0	c0041	1920	1	0	0	1	0	0	copy fasta	GALNT15	chr3	16169680	16235165