JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT16_chr14_69255158_69359466	1/1	c0001	1677	183	57	29	61	7	27	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0002	1677	45	7	11	13	6	8	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0003	1677	31	1	2	22	0	6	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0004	1677	22	18	4	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0005	1677	4	4	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0006	1677	4	0	0	4	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0007	1677	2	0	1	0	1	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0008	1677	2	0	0	0	0	2	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0009	1677	2	0	0	0	0	2	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0010	1677	2	0	0	0	0	2	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0011	1677	1	0	1	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0012	1677	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0013	1677	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0014	1677	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0015	1677	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0016	1677	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0017	1677	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0018	1677	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	c0019	1677	1	1	0	0	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT17_chr7_71127144_71718599	0/0	c0001	1797	56	22	11	9	3	11	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0002	1797	7	2	3	1	0	1	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0003	1797	4	1	1	2	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0004	1797	3	0	2	0	1	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0005	1797	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0006	1797	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0007	1797	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0008	1797	1	0	1	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0009	1797	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	c0010	1797	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT18_chr11_11265877_11627005	1/0	c0001	1824	86	29	17	21	5	13	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0002	1824	58	17	12	13	5	11	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0003	1824	46	10	3	32	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0004	1824	44	12	9	13	2	8	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/1	c0005	1824	7	0	0	0	1	5	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0006	1824	4	4	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0007	1824	2	2	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0008	1824	1	0	0	1	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0009	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0010	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0011	1824	1	0	1	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0012	1824	1	0	0	0	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0013	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0014	1824	1	0	0	0	1	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0015	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0016	1824	1	0	0	0	0	1	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0017	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0018	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0019	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	c0020	1824	1	1	0	0	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT1_chr18_35576740_35716834	1/1	c0001	1680	298	87	62	107	12	28	copy fasta	GALNT1	chr18	35576740	35716834