JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT8_chr12_4715400_4777726	0/0	c0008	1914	3	2	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0009	1914	2	1	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0010	1914	2	0	2	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0011	1914	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0012	1914	2	0	1	0	1	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0013	1914	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0014	1914	1	0	0	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0015	1914	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0016	1914	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0017	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0018	1914	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0019	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0020	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0021	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0022	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0023	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0024	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0025	1914	1	0	0	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0026	1914	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0027	1914	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	c0028	1914	1	0	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT9_chr12_132191372_132334589	0/0	c0001	1812	49	9	19	15	3	3	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/1	c0002	1812	26	10	2	11	1	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0003	1812	17	3	6	7	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0004	1812	11	0	2	8	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0005	1812	7	1	1	3	0	2	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0006	1812	6	3	0	1	0	2	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0007	1812	6	0	1	3	1	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0008	1812	6	0	0	6	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0009	1812	5	0	0	5	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0010	1812	4	3	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0011	1812	4	0	0	4	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0012	1812	4	0	0	2	1	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0013	1812	3	0	0	2	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0014	1812	3	2	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0015	1812	2	1	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0016	1812	2	2	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0017	1812	2	2	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0018	1812	2	0	2	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0019	1812	2	2	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0020	1812	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0021	1812	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0022	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0023	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0024	1812	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0025	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0026	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0027	1812	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0028	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0029	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589