JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALNT9_chr12_132191372_132334589	0/0	c0030	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0031	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0032	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0033	1807	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0034	1812	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0035	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0036	1812	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0037	1812	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0038	1812	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0039	1812	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0040	1812	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	c0041	1812	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNTL5_chr7_151951446_152024929	0/1	c0001	1332	172	41	37	64	7	22	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0002	1332	80	14	22	33	1	10	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0003	1332	56	3	8	31	4	10	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0004	1332	26	0	4	21	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	1/0	c0005	1332	20	19	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0006	1332	8	5	3	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0007	1332	7	6	1	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0008	1332	2	0	0	2	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0009	1332	2	2	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0010	1332	2	0	0	2	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0011	1332	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0012	1332	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0013	1332	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0014	1332	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0015	1332	1	0	0	1	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0016	1332	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0017	1332	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0018	1332	1	0	1	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	c0019	1332	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL6_chr4_171808404_173046559	0/0	c0001	1806	34	28	0	2	2	2	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	c0002	1806	3	3	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	c0003	1806	2	2	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	c0004	1806	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALP_chr19_56171008_56190775	1/0	c0001	351	185	48	32	92	3	9	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	c0002	351	137	14	25	73	6	19	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/1	c0003	351	117	27	21	40	9	19	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	c0004	351	2	2	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	c0005	351	1	1	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	c0006	351	1	0	0	0	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	c0007	351	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALR1_chr18_77244848_77282900	0/1	c0001	1050	192	28	32	105	7	19	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0002	1050	107	18	29	36	6	18	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	1/0	c0003	1050	28	26	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0004	1050	15	8	2	3	1	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0005	1050	10	0	4	6	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0006	1050	3	3	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0007	1050	3	0	0	3	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0008	1050	2	2	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900