JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GALR1_chr18_77244848_77282900	0/0	c0009	1050	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0010	1050	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0011	1050	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0012	1050	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0013	1050	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	c0014	1050	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR2_chr17_76069781_76082537	1/0	c0001	1164	378	70	65	186	16	40	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0002	1154	10	5	3	0	0	2	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0003	1164	4	4	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0004	1164	4	4	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0005	1164	3	3	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0006	1164	2	2	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0008	1164	1	1	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0009	1164	1	0	0	1	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	c0010	1164	1	0	0	1	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR3_chr22_37818382_37830485	0/1	c0001	1107	267	57	44	127	9	29	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	1/0	c0002	1107	84	2	29	36	5	11	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0003	1107	20	20	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0004	1107	9	8	1	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0005	1107	7	0	0	7	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0006	1107	4	0	0	4	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0007	1107	3	0	0	3	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0008	1107	2	0	2	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0009	1107	1	1	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0010	1131	1	0	0	0	0	1	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0011	1107	1	0	0	0	0	1	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0012	1107	1	0	0	1	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0013	1107	1	1	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALR3_chr22_37818382_37830485	0/0	c0014	1107	1	1	0	0	0	0	copy fasta	GALR3	chr22	37818382	37830485
GALT_chr9_34641675_34656035	1/1	c0001	1140	375	80	69	176	12	36	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0002	1140	15	0	4	1	4	6	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0003	1140	11	9	2	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0004	1140	9	2	1	0	0	6	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0005	1140	2	2	0	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0006	1140	1	0	0	1	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0008	1140	1	1	0	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	c0009	1140	1	1	0	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GAL_chr11_68679544_68696175	1/1	c0001	372	390	91	78	167	14	38	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	c0002	372	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	c0003	372	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	c0004	372	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	c0005	372	1	0	0	1	0	0	copy fasta	GAL	chr11	68679544	68696175
GAMT_chr19_1392026_1406542	1/1	c0001	711	372	93	66	159	13	39	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0002	711	10	0	5	0	4	1	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0003	711	5	0	0	5	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0004	711	4	0	0	4	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0005	711	3	0	3	0	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0006	711	2	0	2	0	0	0	copy fasta	GAMT	chr19	1392026	1406542