JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAMT_chr19_1392026_1406542	0/0	c0007	711	1	0	0	1	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0008	711	1	1	0	0	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0009	711	1	0	0	1	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0010	711	1	0	0	0	1	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0011	711	1	0	0	0	0	1	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	c0012	711	1	0	0	0	0	1	copy fasta	GAMT	chr19	1392026	1406542
GANAB_chr11_62619829_62651613	1/1	c0001	2835	268	77	66	79	12	32	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0002	2835	8	0	0	8	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0003	2835	3	3	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0004	2835	3	0	1	2	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0005	2835	3	3	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0006	2835	2	0	0	2	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0007	2835	2	0	1	0	0	1	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0008	2835	2	2	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0009	2835	2	2	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0010	2835	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0011	2835	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0012	2835	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0013	2835	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0014	2835	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0015	2835	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0016	2835	1	0	0	0	0	1	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0017	2835	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0018	2835	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0019	2835	1	0	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0020	2835	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0021	2835	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0022	2835	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0023	2835	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	c0024	2835	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANC_chr15_42268201_42358666	0/1	c0001	2745	101	16	20	47	4	13	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0002	2745	50	18	17	11	0	4	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0003	2745	23	4	8	1	4	6	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0004	2745	17	0	0	15	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0005	2745	9	9	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0006	2745	8	6	1	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0007	2745	7	7	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0008	2745	6	6	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0009	2745	4	0	2	0	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0010	2745	4	3	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0011	2745	4	3	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0012	2745	4	0	1	0	0	3	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0013	2745	3	3	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0014	2745	3	0	2	0	0	1	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0015	2745	3	2	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0016	2745	2	2	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0017	2745	2	2	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0018	2745	2	0	0	0	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0019	2745	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	1/0	c0020	2745	1	0	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666