JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GANC_chr15_42268201_42358666	0/0	c0021	2745	1	0	0	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0022	2745	1	0	0	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0023	2745	1	0	0	0	0	1	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0024	2745	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0025	2745	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0026	2745	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0027	2745	1	0	0	1	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	c0028	2745	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GAN_chr16_81309962_81395809	1/1	c0001	1794	334	67	58	164	7	36	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0002	1794	43	19	8	9	3	4	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0003	1794	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0004	1794	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0005	1794	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0006	1794	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0007	1794	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	c0008	1794	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAP43_chr3_115618510_115726483	1/1	c0001	717	338	84	70	128	10	44	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	c0002	717	14	8	2	4	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAPDHS_chr19_35528456_35550319	1/1	c0001	1227	308	85	54	127	7	33	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0002	1227	106	3	22	65	3	13	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0003	1227	3	0	0	3	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0004	1227	3	0	0	0	1	2	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0005	1227	2	0	0	2	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0006	1227	2	2	0	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0007	1227	1	1	0	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0008	1227	1	1	0	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0009	1227	1	0	0	1	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	c0010	1227	1	0	0	0	1	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDH_chr12_6529517_6543371	0/0	c0001	1008	239	42	57	102	13	25	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0002	1008	202	51	29	101	3	18	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0003	1008	4	1	0	3	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0004	1008	2	0	0	2	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0005	1008	1	1	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0006	1008	1	0	0	0	0	1	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0007	1008	1	0	0	1	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0008	1008	1	0	0	0	0	1	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0009	1008	1	0	0	0	0	1	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0010	1008	1	1	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0011	1008	1	1	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0012	1008	1	0	0	1	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	c0013	1008	1	1	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPT_chr5_58486435_58502090	1/1	c0001	474	369	83	66	153	18	47	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	c0002	474	3	3	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	c0003	474	3	3	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	c0004	474	1	1	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	c0005	474	1	0	0	0	0	1	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	c0006	474	1	0	0	1	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPVD1_chr9_125256826_125372207	0/1	c0001	4383	271	51	41	140	10	28	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0002	4383	31	0	6	24	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0003	4383	17	14	2	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207