JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAPVD1_chr9_125256826_125372207	1/0	c0004	4383	4	0	2	0	1	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0005	4383	3	0	1	0	1	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0006	4383	2	1	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0007	4383	2	0	0	0	0	2	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0008	4383	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0009	4383	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0010	4383	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0011	4383	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0012	4383	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0013	4383	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0014	4383	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0015	4383	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0016	4383	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	c0017	4383	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAR1_chr4_109810762_109829737	0/1	c0001	654	328	67	45	167	10	38	copy fasta	GAR1	chr4	109810762	109829737
GAR1_chr4_109810762_109829737	1/0	c0002	654	96	27	29	29	4	6	copy fasta	GAR1	chr4	109810762	109829737
GAR1_chr4_109810762_109829737	0/0	c0003	654	2	2	0	0	0	0	copy fasta	GAR1	chr4	109810762	109829737
GAREM1_chr18_32258522_32475882	1/1	c0001	2631	57	15	17	13	6	4	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0002	2631	28	13	3	9	0	3	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0003	2631	15	11	2	0	1	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0004	2631	12	8	1	1	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0005	2631	8	8	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0006	2631	8	6	2	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0007	2631	7	0	0	7	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0008	2631	6	2	0	4	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0009	2631	4	2	1	0	0	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0010	2631	4	1	1	1	0	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0011	2631	4	0	0	4	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0012	2631	3	0	0	3	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0013	2631	3	0	1	2	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0014	2631	3	0	1	0	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0015	2631	3	3	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0016	2631	3	0	0	2	0	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0017	2631	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0018	2631	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0019	2631	2	0	0	0	1	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0020	2631	2	0	0	0	2	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0021	2631	2	0	2	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0022	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0023	2631	1	0	1	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0024	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0025	2631	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0026	2631	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0027	2631	1	0	1	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0028	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0029	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0030	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0031	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0032	2631	1	0	1	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0033	2631	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882