JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAREM1_chr18_32258522_32475882	0/0	c0034	2631	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	c0035	2631	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM2_chr2_26168088_26194663	0/0	c0001	2625	196	58	46	70	2	20	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0002	2625	57	3	16	22	8	8	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/1	c0003	2625	12	2	5	1	1	2	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0004	2625	9	9	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0005	2625	7	4	3	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	1/0	c0006	2625	6	1	2	2	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0007	2625	3	1	2	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0008	2625	2	2	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0009	2625	2	0	2	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0010	2625	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0011	2625	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0012	2625	1	0	0	0	1	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0013	2625	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0014	2625	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0015	2625	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0016	2625	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0017	2625	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0018	2625	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0019	2625	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0020	2625	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	c0021	2625	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GARIN1A_chr7_128667292_128692877	1/0	c0001	903	236	64	48	90	6	27	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/1	c0002	903	89	8	14	55	3	8	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0003	903	54	2	9	29	5	9	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0004	903	37	13	7	12	2	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0005	903	3	0	0	0	0	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0006	903	3	3	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0007	903	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0008	903	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0009	903	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0010	903	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0011	903	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	c0012	903	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1B_chr7_128710391_128736743	1/0	c0001	1029	254	56	47	116	10	24	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/1	c0002	1029	97	5	17	68	1	5	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0003	1029	66	8	15	23	3	17	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0004	1029	27	25	2	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0005	1029	3	3	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0006	1029	2	0	2	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0007	1029	1	0	1	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0008	1029	1	1	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN2_chr14_67184440_67228940	1/1	c0001	1254	147	29	31	72	2	11	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0002	1254	133	41	21	65	1	5	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0003	1251	21	8	8	3	1	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0004	1251	6	6	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0005	1254	5	1	0	3	0	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0006	1255	5	1	3	0	0	1	copy fasta	GARIN2	chr14	67184440	67228940