JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GARIN2_chr14_67184440_67228940	0/0	c0007	1254	5	3	1	1	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0008	1245	3	3	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0009	1254	2	0	2	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0010	1254	2	0	0	2	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0011	1254	1	1	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0012	1254	1	1	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	c0013	1254	1	0	0	0	0	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN3_chr5_157156846_157171264	1/1	c0001	1818	307	51	54	156	8	36	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0002	1818	43	20	10	6	3	4	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0003	1818	12	9	2	0	1	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0004	1818	6	6	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0005	1818	5	0	0	5	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0006	1818	5	5	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0007	1818	4	0	0	4	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0008	1818	3	3	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0009	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0010	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0011	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0012	1818	1	0	1	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0013	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0014	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0015	1818	1	0	1	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0016	1818	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0017	1818	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0018	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	c0019	1818	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN4_chr1_212619474_212631775	0/0	c0001	1785	160	17	17	89	12	25	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	1/0	c0002	1785	102	14	11	72	1	3	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/1	c0003	1785	61	27	12	13	2	6	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0004	1785	55	0	18	36	0	1	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0005	1785	17	7	3	0	0	7	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0006	1785	16	11	3	0	0	2	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0007	1785	16	0	11	5	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0008	1785	13	12	1	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0009	1785	5	0	0	5	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0010	1785	4	1	1	0	0	2	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0011	1785	3	0	1	0	0	2	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0012	1785	2	0	0	0	2	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0013	1785	2	0	0	2	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0014	1785	2	2	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0015	1785	2	0	0	2	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0016	1785	1	0	1	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0017	1785	1	0	0	0	1	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0018	1785	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0019	1785	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0020	1785	1	0	0	1	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0021	1785	1	0	1	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0022	1785	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0023	1785	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	c0024	1785	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775