JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GARIN4_chr1_212619474_212631775	0/0	c0025	1785	1	0	0	1	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN5A_chr19_50461788_50481848	1/1	c0001	744	360	68	73	154	18	45	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0002	744	35	13	1	19	0	2	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0003	744	9	9	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0004	765	4	0	0	4	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0005	744	2	2	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0006	744	1	0	0	1	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0007	744	1	0	0	0	0	1	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0008	744	1	1	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	c0009	744	1	1	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5B_chr19_55349908_55368260	0/1	c0001	2745	218	28	40	101	13	35	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0002	2745	17	14	3	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0003	2769	17	6	7	3	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	1/0	c0004	2769	17	0	0	16	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0005	2769	13	6	5	2	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0006	2745	7	5	2	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0007	2745	7	6	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0008	2745	6	2	1	0	1	2	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0009	2775	6	6	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0010	2745	6	5	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0011	2745	3	3	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0012	2745	3	0	3	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0013	2745	3	0	1	1	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0014	2745	2	1	0	0	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0015	2769	2	2	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0016	2745	2	2	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0017	2769	2	0	2	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0018	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0019	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0020	2775	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0021	2745	1	0	0	0	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0022	2745	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0023	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0024	2775	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0025	2745	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0026	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0027	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0028	2745	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0029	2745	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0030	2745	1	0	0	0	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0031	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0032	2745	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0033	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0034	2745	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0035	2769	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0036	2769	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0037	2745	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0038	2769	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0039	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0040	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260