JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GARIN5B_chr19_55349908_55368260	0/0	c0041	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	c0042	2745	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN6_chr12_99642753_99655114	1/0	c0001	726	362	74	64	177	12	34	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/1	c0002	726	79	18	14	30	4	12	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0003	726	7	0	0	7	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0004	726	2	0	0	2	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0005	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0006	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0007	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0008	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0009	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	c0010	726	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARNL3_chr9_127259774_127398660	1/1	c0001	3042	273	56	45	129	16	25	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0002	3042	19	18	1	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0003	3042	1	1	0	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0004	3042	1	0	1	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0005	3042	1	0	0	1	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0006	3042	1	0	0	1	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0007	3042	1	1	0	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0008	3042	1	0	0	1	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0009	3042	1	0	1	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	c0010	3042	1	0	0	0	0	1	copy fasta	GARNL3	chr9	127259774	127398660
GARRE1_chr19_34249554_34360566	0/1	c0001	3213	195	47	29	90	7	21	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	1/0	c0002	3213	89	13	29	32	5	9	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0003	3213	18	17	0	1	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0004	3213	8	8	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0005	3201	3	0	2	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0006	3213	2	2	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0007	3213	2	0	0	0	0	2	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0008	3213	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0009	3213	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0010	3213	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0011	3213	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0012	3213	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0013	3213	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0014	3213	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0015	3213	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	c0016	3213	1	0	0	1	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARS1_chr7_30589878_30639033	1/0	c0001	2220	156	43	25	68	6	13	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/1	c0002	2220	123	8	25	64	10	15	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0003	2220	79	9	10	46	0	14	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0004	2220	17	15	2	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0005	2220	7	6	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0006	2220	5	5	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0007	2220	5	3	2	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0008	2220	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0009	2220	1	1	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0010	2220	1	0	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0011	2220	1	0	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0012	2220	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033