JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GARS1_chr7_30589878_30639033	0/0	c0013	2220	1	1	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0014	2220	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0015	2220	1	0	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0016	2220	1	1	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	c0017	2220	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GART_chr21_33498933_33547117	0/0	c0001	3033	267	79	46	110	9	23	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0002	3033	57	0	11	35	3	8	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	1/1	c0003	3033	41	5	9	11	4	10	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0004	3033	6	5	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0005	3033	3	3	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0006	3033	3	2	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0007	3033	2	0	0	2	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0008	3033	1	1	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0009	3033	1	0	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0010	3033	1	0	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0011	3033	1	0	0	0	0	1	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	c0012	3033	1	1	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GAS1_chr9_86939362_86952506	1/1	c0001	1038	407	88	65	197	18	37	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	c0002	1038	31	5	13	13	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	c0003	1038	1	0	0	0	0	1	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	c0004	1038	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS2L1_chr22_29301650_29317787	1/0	c0001	2046	203	67	24	90	4	17	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/1	c0002	2046	136	13	33	65	8	16	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0003	2046	60	1	7	36	2	14	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0004	2046	5	5	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0005	2046	4	0	2	0	2	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0006	2046	4	4	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0007	2046	2	0	2	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0008	2046	2	2	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0009	2046	1	0	0	0	0	1	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0010	2046	1	0	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0011	2046	1	0	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0012	2046	1	1	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0013	2046	1	0	1	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0014	2046	1	0	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0015	2046	1	0	1	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	c0016	2046	1	1	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L2_chr17_35739511_35758239	1/1	c0001	2643	185	38	42	66	10	27	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0002	2643	43	4	3	33	0	3	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0003	2643	35	19	4	8	2	2	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0004	2643	34	3	11	16	1	3	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0005	2643	27	1	2	20	1	3	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0006	2643	18	0	0	18	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0007	2643	11	7	1	2	1	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0008	2643	7	0	4	2	1	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0009	2643	6	0	0	6	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0010	2643	4	3	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0011	2643	4	0	4	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0012	2643	4	1	2	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0013	2643	4	0	0	3	0	1	copy fasta	GAS2L2	chr17	35739511	35758239