JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAS2L2_chr17_35739511_35758239	0/0	c0014	2643	3	3	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0015	2643	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0016	2643	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0017	2643	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0018	2643	2	0	2	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0019	2643	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0020	2643	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0021	2643	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0022	2643	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0023	2643	2	0	0	1	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0024	2643	2	0	0	0	0	2	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0025	2643	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0026	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0027	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0028	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0029	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0030	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0031	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0032	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0033	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0034	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0035	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0036	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0037	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0038	2643	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0039	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0040	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0041	2643	1	0	0	0	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0042	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0043	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0044	2643	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0045	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0046	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0047	2643	1	0	0	0	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0048	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0049	2643	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0050	2643	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0051	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0052	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0053	2643	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	c0054	2643	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L3_chr12_100568684_100633288	0/0	c0001	2085	208	33	32	118	4	21	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0002	2085	74	10	13	35	4	12	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	1/1	c0003	2085	72	27	10	17	7	9	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0004	2085	34	4	11	15	1	3	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0005	2085	4	4	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0006	2085	2	0	0	1	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0007	2085	2	2	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0008	2085	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0009	2118	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288