JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAS2L3_chr12_100568684_100633288	0/0	c0010	2085	1	0	1	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0011	2085	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0012	2085	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	c0013	2085	1	0	1	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2_chr11_22661611_22818001	0/1	c0001	942	140	17	28	79	5	10	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	1/0	c0002	942	120	56	17	35	1	10	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	c0003	942	7	7	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	c0004	942	4	3	1	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	c0005	942	1	1	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS6_chr13_113815549_113869076	1/0	c0001	2037	74	9	18	30	7	9	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0002	2037	24	10	4	7	1	2	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0003	2037	20	2	3	10	0	5	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0004	2037	5	1	4	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0005	2037	4	3	1	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0006	2037	4	2	1	0	1	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0007	2037	2	2	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0008	2037	1	0	0	1	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0009	2037	1	0	1	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0010	2037	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0011	2037	1	0	0	1	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0012	2037	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0013	2037	1	0	0	0	1	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0014	2037	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0015	2037	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0016	2037	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	c0017	2037	1	0	0	1	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS7_chr17_9905606_10203606	1/1	c0001	1431	174	62	41	46	8	15	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0002	1431	20	3	9	0	2	6	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0003	1431	14	10	1	3	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0004	1431	2	1	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0005	1431	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0006	1431	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0007	1431	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0008	1431	1	0	0	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS8_chr16_90017680_90049960	0/0	c0001	1437	119	6	25	81	1	6	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0002	1437	90	43	13	21	3	10	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0003	1437	77	32	19	5	11	10	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	1/1	c0004	1437	57	2	15	27	1	10	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0005	1437	10	0	0	10	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0006	1437	7	0	1	4	0	2	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0007	1437	5	0	3	1	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0008	1437	3	0	0	3	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0009	1437	3	3	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0010	1437	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0012	1437	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0013	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960