JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GAS8_chr16_90017680_90049960	0/0	c0014	1437	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0015	1437	1	0	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0018	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0019	1437	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0020	1437	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0021	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0022	1437	1	0	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0023	1437	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0025	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0026	1437	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	c0027	1437	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GASK1A_chr3_42974311_43062715	0/0	c0001	1728	96	15	22	52	3	4	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0002	1728	80	16	18	26	4	16	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/1	c0003	1728	47	2	7	22	2	13	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0004	1728	30	3	11	8	3	5	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0005	1728	24	10	2	12	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0006	1728	16	13	2	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	1/0	c0007	1728	10	8	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0008	1728	7	4	1	0	0	2	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0009	1728	5	4	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0010	1728	4	4	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0011	1728	3	3	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0012	1728	2	0	0	2	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0013	1728	2	2	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0014	1728	2	2	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0015	1728	2	1	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0016	1728	2	1	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0017	1728	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0019	1728	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0020	1728	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0021	1728	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0022	1728	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0023	1728	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0024	1728	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0025	1728	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	c0026	1728	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1B_chr4_158119474_158178025	0/1	c0001	1560	223	51	43	104	4	20	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	1/0	c0002	1560	65	37	11	6	2	8	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	c0003	1560	2	0	0	2	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	c0004	1560	1	0	1	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	c0005	1560	1	0	1	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GAST_chr17_41707331_41720969	0/1	c0001	306	312	52	67	138	15	39	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	1/0	c0002	306	56	19	7	23	3	3	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	0/0	c0003	306	19	19	0	0	0	0	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	0/0	c0004	306	9	0	0	9	0	0	copy fasta	GAST	chr17	41707331	41720969
GATA1_chrX_48781590_48799311	1/1	c0001	1242	257	71	48	102	9	25	copy fasta	GATA1	chrX	48781590	48799311