JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GATA1_chrX_48781590_48799311	0/0	c0002	1242	2	2	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0003	1242	1	1	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0004	1242	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0005	1242	1	1	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0006	1242	1	0	0	0	0	1	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0007	1242	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0008	1242	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0009	1242	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0010	1242	1	1	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	c0011	1241	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA2_chr3_128474427_128493530	0/0	c0001	1443	186	65	36	59	8	18	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0002	1443	111	12	17	69	3	10	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	1/1	c0003	1443	109	15	22	52	3	15	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0004	1443	11	0	0	10	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0005	1443	4	0	3	0	1	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0006	1443	3	0	1	0	1	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0008	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0009	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0010	1443	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0013	1443	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0014	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0015	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	c0016	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128498201	0/0	c0001	1443	188	63	39	62	6	18	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	1/1	c0002	1443	108	16	20	52	3	15	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0003	1443	106	13	16	64	3	10	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0004	1443	11	0	0	10	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0005	1443	4	0	3	0	1	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0006	1443	3	0	1	0	1	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0008	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0009	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0010	1443	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0013	1443	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0014	1443	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0015	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	c0016	1443	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA3_chr10_8049688_8080198	1/1	c0001	1335	336	72	77	139	15	31	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0002	1335	14	14	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0003	1335	5	0	5	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0004	1335	5	2	1	0	1	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0005	1335	3	3	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0006	1335	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0007	1335	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0008	1335	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198