JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GATA3_chr10_8049688_8080198	0/0	c0009	1335	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0010	1335	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0011	1335	1	0	1	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	c0012	1335	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA4_chr8_11699202_11765002	1/1	c0001	1332	277	69	58	106	7	35	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0002	1332	14	14	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0003	1332	13	1	9	0	3	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0004	1332	7	0	0	7	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0005	1332	6	3	0	0	0	3	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0006	1332	4	4	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0007	1332	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0008	1332	3	0	0	0	0	3	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0009	1332	2	0	0	2	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0010	1332	2	0	0	0	0	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0011	1332	2	0	0	0	0	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0012	1332	2	2	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0013	1332	1	0	0	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0014	1332	1	0	0	1	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0015	1332	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0016	1332	1	0	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	c0017	1332	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA5_chr20_62458497_62480995	1/1	c0001	1194	103	2	23	61	3	12	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0002	1194	93	26	20	36	3	8	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0003	1194	40	18	5	13	1	3	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0004	1194	33	12	2	14	0	5	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0005	1194	32	3	4	11	2	12	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0006	1194	13	5	4	0	3	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0007	1194	10	1	3	4	1	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0008	1194	9	1	3	2	2	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0009	1194	6	1	5	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0010	1194	5	5	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0011	1194	4	2	1	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0012	1194	3	3	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0013	1194	3	0	3	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0014	1194	3	0	3	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0015	1194	3	1	0	2	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0016	1195	2	0	2	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0017	1195	2	0	1	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0018	1194	2	2	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0019	1194	2	2	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0020	1194	2	0	0	2	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0021	1194	2	0	0	0	1	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0022	1194	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0023	1204	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0024	1195	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0025	1194	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0026	1194	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0027	1194	1	0	0	0	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0028	1194	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0029	1195	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995