JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GATA5_chr20_62458497_62480995	0/0	c0030	1194	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	c0031	1194	1	0	0	0	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA6_chr18_22164589_22207528	1/1	c0001	1788	247	78	35	91	10	31	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0002	1788	23	10	3	10	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0003	1788	11	7	4	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0004	1788	1	0	1	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0005	1788	1	0	0	0	0	1	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0006	1788	1	0	1	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0007	1788	1	0	0	1	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	c0008	1788	1	1	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATAD1_chr7_92442482_92465075	1/1	c0001	810	287	73	46	127	11	28	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0002	810	34	8	6	10	5	5	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0003	810	3	0	0	0	0	3	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0004	810	2	0	0	2	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0005	810	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0006	795	1	0	0	1	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0007	810	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	c0008	810	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD2A_chr19_19400675_19513932	0/0	c0001	1905	176	54	33	54	7	28	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	1/1	c0002	1905	111	26	17	47	5	14	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0003	1905	3	3	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0004	1905	2	2	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0005	1905	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0006	1905	1	0	1	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0007	1922	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0008	1905	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0009	1905	1	0	1	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	c0010	1905	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2B_chr1_153799725_153927972	0/1	c0001	1782	340	82	59	152	8	38	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	c0002	1782	4	4	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	c0003	1782	2	0	2	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	c0004	1782	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	c0005	1782	1	0	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATB_chr4_151665504_151766007	1/0	c0001	1674	244	58	45	106	7	27	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0002	1674	47	22	3	20	2	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0003	1674	9	0	2	6	0	1	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0004	1674	4	4	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/1	c0005	1674	3	0	1	0	1	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0006	1674	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0007	1674	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0008	1674	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0009	1674	2	1	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0010	1674	1	0	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0011	1674	1	0	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0012	1674	1	1	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0013	1674	1	0	1	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	c0014	1674	1	0	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATC_chr12_120441444_120468749	1/1	c0001	411	284	84	44	113	15	26	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	c0002	411	112	6	27	66	1	12	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	c0003	411	8	0	1	1	2	4	copy fasta	GATC	chr12	120441444	120468749