JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GATC_chr12_120441444_120468749	0/0	c0004	411	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	c0005	411	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	c0006	411	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	c0007	411	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATD1_chr11_762222_782487	1/0	c0001	663	180	42	37	69	9	22	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/1	c0002	663	128	14	38	59	6	10	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0003	663	80	23	3	44	0	10	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0004	663	19	14	3	0	2	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0005	663	12	0	0	12	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0006	663	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0007	663	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0008	663	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0009	663	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0010	663	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0011	663	1	0	0	0	1	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0012	663	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0013	663	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	c0014	663	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD3_chr21_44128683_44150711	0/0	c0001	807	34	24	5	5	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	c0002	807	20	14	3	3	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATM_chr15_45356124_45383544	0/0	c0001	1272	184	79	37	54	3	11	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	1/1	c0002	1272	67	6	18	17	10	14	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	c0003	1272	43	2	7	21	1	12	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	c0004	1272	1	0	0	0	0	1	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	GATM	chr15	45356124	45383544
GBA1_chr1_155229452_155246249	0/1	c0001	1611	366	84	61	156	18	46	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0002	1611	11	0	0	11	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0003	1611	5	5	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0004	1611	2	0	0	2	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0005	1611	2	0	2	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0006	1611	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0007	1611	1	0	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0008	1611	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0009	1611	1	0	1	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0010	1611	1	0	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0011	1611	1	0	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	c0012	1611	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA2_chr9_35731866_35754228	1/1	c0001	2784	386	70	64	196	10	44	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0002	2784	13	11	2	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0003	2784	7	6	1	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0004	2784	3	0	0	3	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0005	2784	2	0	0	2	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0006	2784	2	2	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0007	2784	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0008	2784	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0009	2784	1	0	0	1	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0010	2784	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0011	2784	1	0	1	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0012	2784	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	c0013	2784	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228