JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GBE1_chr3_81484703_81766645	0/1	c0001	2109	150	30	35	69	4	11	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0002	2109	83	16	18	40	2	7	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0003	2109	34	8	9	14	1	2	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0004	2109	19	18	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0005	2109	3	0	0	3	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0006	2109	3	3	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	1/0	c0007	2109	2	0	0	0	1	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0008	2109	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0009	2109	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0010	2109	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0011	2109	1	0	1	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0012	2109	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0013	2109	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0014	2109	1	0	1	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0015	2109	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0016	1899	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	c0017	2109	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBF1_chr10_102240532_102387896	0/1	c0001	5583	274	67	49	120	8	29	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0002	5583	12	0	7	2	3	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0003	5583	11	6	1	0	1	3	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0004	5583	6	6	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0005	5583	5	0	0	5	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0006	5583	2	0	0	2	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	1/0	c0007	5583	2	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0008	5583	2	0	0	2	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0009	5583	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0010	5583	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0011	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0012	5583	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0013	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0014	5583	1	0	0	0	0	1	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0015	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0016	5583	1	0	0	1	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0017	5583	1	0	0	0	0	1	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0018	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0019	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0020	5583	1	0	0	1	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0021	5583	1	1	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0022	5583	1	0	0	1	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0023	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	c0024	5583	1	0	1	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBGT1_chr9_133147948_133168914	1/0	c0001	1044	218	39	46	88	16	28	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/1	c0002	1044	141	10	23	92	0	15	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0003	1044	10	10	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0004	1044	10	9	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0005	1044	7	7	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0006	1044	6	0	6	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0007	1044	5	0	0	5	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0008	1044	4	1	2	0	1	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0009	1044	4	3	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914