JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GBGT1_chr9_133147948_133168914	0/0	c0010	1044	4	0	4	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0011	1044	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0012	1044	3	0	0	3	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0013	1044	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0014	1044	3	0	0	3	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0015	1044	2	0	0	2	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0016	1044	1	0	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0017	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0018	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0019	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0020	1044	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0021	1044	1	0	0	0	1	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0022	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0023	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0024	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0025	1044	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0026	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0027	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0028	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0029	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0030	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0031	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0032	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0033	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0034	1044	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0035	1044	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0036	1044	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0037	1044	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	c0038	1044	1	0	0	0	0	1	copy fasta	GBGT1	chr9	133147948	133168914
GBP1_chr1_89047319_89070208	1/0	c0001	1779	142	20	14	96	4	7	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0002	1779	124	44	22	40	6	12	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0003	1779	122	21	21	57	7	16	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0004	1779	12	0	11	0	1	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0005	1779	5	0	0	5	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0006	1779	4	4	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0007	1779	4	0	4	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0008	1779	4	4	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/1	c0009	1779	2	0	0	0	0	1	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0010	1779	2	0	2	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0011	1779	2	2	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0012	1779	2	2	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0013	1779	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0014	1779	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0015	1779	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0016	1779	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	c0017	1779	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP2_chr1_89101132_89131114	0/1	c0001	1776	254	35	41	140	9	28	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	1/0	c0002	1776	133	51	30	30	9	12	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0003	1776	20	0	1	17	0	2	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0004	1776	2	2	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114