JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GBP2_chr1_89101132_89131114	0/0	c0005	1776	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0006	1776	1	0	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0007	1776	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0008	1776	1	0	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	c0009	1776	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP3_chr1_89001680_89027866	1/0	c0001	1788	167	40	27	88	4	7	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0002	1294	80	4	20	39	5	12	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/1	c0003	1788	67	13	11	22	6	14	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0004	1788	59	2	9	33	3	12	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0005	1788	18	0	1	17	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0006	1788	14	14	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0007	1788	11	11	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0008	1788	3	3	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0009	1788	3	3	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0010	1788	2	1	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0011	1788	2	0	2	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0012	1788	2	0	0	2	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0013	1294	1	0	1	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0014	1788	1	0	0	0	0	1	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0015	1788	1	0	1	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0016	1788	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0017	1788	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0018	1788	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0019	1788	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	c0020	1294	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP4_chr1_89176144_89203942	1/0	c0001	1923	226	48	40	108	8	21	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/1	c0002	1923	118	9	20	58	7	23	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0003	1923	30	29	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0004	1923	8	0	0	8	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0005	1923	7	1	4	2	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0006	1923	3	3	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0007	1923	3	0	2	0	1	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0008	1923	3	3	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0009	1923	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0010	1923	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0011	1923	1	0	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	c0012	1923	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP5_chr1_89251189_89277860	1/1	c0001	1761	328	66	53	158	14	35	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0002	1761	51	5	11	24	3	8	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0003	1761	27	0	3	23	0	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0004	1761	8	8	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0005	1761	6	5	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0006	1761	3	3	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0007	1761	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0008	1761	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0009	1761	1	0	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0010	1761	1	0	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0011	1761	1	0	0	0	1	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0012	1761	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	c0013	1761	1	0	0	1	0	0	copy fasta	GBP5	chr1	89251189	89277860