JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GBP6_chr1_89359059_89393160	0/0	c0001	1902	244	62	35	110	10	27	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0002	1902	74	1	16	52	1	4	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	1/0	c0003	1902	70	5	10	46	1	7	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0004	1902	16	1	10	0	2	3	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/1	c0005	1902	8	1	3	0	2	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0006	1902	5	5	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0007	1902	4	0	0	4	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0008	1902	4	0	0	4	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0009	1902	4	4	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0010	1902	4	4	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0011	1902	3	3	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0012	1902	3	3	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0013	1902	2	0	2	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0014	1902	2	0	0	2	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0015	1902	2	2	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0016	1902	2	2	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0017	1902	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0018	1902	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0019	1902	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0020	1902	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	c0021	1902	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP7_chr1_89126742_89181003	0/1	c0001	1917	254	54	43	122	9	25	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	1/0	c0002	1917	90	15	19	36	7	12	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0003	1917	6	0	4	2	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0004	1917	6	6	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0005	1917	4	4	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0006	1917	3	3	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0007	1917	3	0	0	3	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0008	1917	3	2	1	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0009	1917	2	2	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0010	1917	1	0	1	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0012	1917	1	1	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0013	1917	1	1	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	c0014	1917	1	0	0	0	0	1	copy fasta	GBP7	chr1	89126742	89181003
GBX1_chr7_151143009_151172694	1/1	c0001	1092	254	50	45	120	11	26	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0002	1092	131	31	24	64	5	7	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0003	1092	7	6	0	1	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0004	1092	2	0	0	2	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0005	1092	2	2	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0006	1092	1	1	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0007	1092	1	0	0	1	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0008	1092	1	0	0	0	0	1	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	c0009	1092	1	0	1	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX2_chr2_236160236_236173386	1/1	c0001	1047	316	84	40	130	15	45	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	c0002	1047	12	2	4	0	3	3	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	c0003	1047	9	9	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	c0004	1047	2	2	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	c0005	1047	2	1	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	c0006	1047	1	0	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386