JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCAT_chr22_37802934_37821897	0/1	c0001	1260	185	39	34	85	11	15	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	1/0	c0002	1260	162	15	34	80	7	25	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0003	1260	14	14	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0004	1260	4	4	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0005	1260	4	4	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0006	1260	4	2	2	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0007	1260	3	3	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0008	1260	2	2	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0009	1260	2	2	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0010	1260	1	0	0	0	0	1	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0011	1260	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0012	1260	1	0	1	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0013	1260	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0014	1260	1	0	1	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0015	1260	1	0	0	0	0	1	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0016	1260	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0017	1260	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0018	1260	1	1	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	c0019	1260	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCA_chr2_162339132_162368123	1/1	c0001	654	347	85	61	153	11	35	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	c0002	654	13	3	6	0	3	1	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	c0003	654	2	0	0	0	2	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	c0004	654	2	0	0	2	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	c0005	654	1	0	0	1	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	c0006	654	1	0	1	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCC1_chr7_127575628_127590596	1/1	c0001	2328	199	50	52	60	5	30	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0002	2328	109	1	17	77	4	10	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0003	2328	36	18	5	8	2	3	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0004	2328	8	8	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0005	2328	6	6	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0006	2328	6	5	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0007	2328	6	3	0	3	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0008	2328	4	0	1	0	1	2	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0009	2328	3	1	0	0	2	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0010	2328	2	0	2	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0011	2328	2	2	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0012	2328	1	0	0	0	0	1	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0013	2328	1	0	0	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0014	2328	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0015	2328	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	c0016	2328	1	0	0	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC2_chr2_108444206_108514415	0/0	c0001	5055	150	57	27	26	10	30	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/1	c0002	5055	84	12	13	41	6	11	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0003	5055	7	0	0	7	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0004	5055	7	7	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0005	5055	5	0	5	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0006	5055	4	4	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0007	5055	3	3	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0008	5055	3	0	0	3	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0009	5055	2	0	2	0	0	0	copy fasta	GCC2	chr2	108444206	108514415