Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AHCYL2_chr7_129220030_129435211	0/1	c0002	1836	90	23	18	35	4	9	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	c0003	1836	1	0	0	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	c0004	1836	1	0	0	0	0	1	copy fasta	AHCYL2	chr7	129220030	129435211
AHCYL2_chr7_129220030_129435211	0/0	c0005	1836	1	1	0	0	0	0	copy fasta	AHCYL2	chr7	129220030	129435211
AHCY_chr20_34275268_34308355	1/1	c0001	1299	293	82	50	117	10	32	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0002	1299	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0003	1299	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0004	1299	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0005	1299	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0006	1299	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0007	1299	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	c0008	1299	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHDC1_chr1_27529245_27609144	0/1	c0001	4812	112	58	14	17	5	17	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0002	4812	22	2	6	8	2	4	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0003	4812	10	7	3	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0004	4809	7	7	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0005	4812	5	0	4	1	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0006	4812	3	0	2	0	1	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0007	4812	3	3	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0008	4812	2	2	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0009	4809	2	2	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0010	4809	2	2	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0011	4812	1	0	1	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	1/0	c0012	4812	1	0	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0013	4812	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0014	4812	1	0	1	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0015	4812	1	0	0	1	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0016	4812	1	0	0	1	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0017	4812	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0018	4812	1	0	1	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0019	4812	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0020	4812	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0021	4812	1	0	0	0	0	1	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	c0022	4812	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHI1_chr6_135278532_135502740	1/1	c0001	3591	179	63	47	43	9	15	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0002	3591	8	0	0	5	0	3	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0003	3591	5	3	2	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0004	3591	4	4	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0005	3591	3	0	0	3	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0006	3591	2	0	0	2	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0007	3591	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0008	3591	2	0	1	0	1	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0009	3591	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0010	3591	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0011	3591	1	0	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0012	3591	1	0	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0013	3591	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0014	3591	1	0	0	1	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0015	3591	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	c0016	3591	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740