JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCC2_chr2_108444206_108514415	0/0	c0010	5055	2	1	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	1/0	c0011	5055	1	0	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0012	5055	1	0	0	0	0	1	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0013	5055	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0014	5055	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0015	5055	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0016	5055	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0017	5055	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0018	5055	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	c0019	5055	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCDH_chr19_12886160_12904999	1/1	c0001	1317	269	79	41	106	16	25	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0002	1317	91	13	35	29	2	12	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0003	1317	6	0	0	6	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0004	1317	2	1	1	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0005	1317	2	2	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0006	1317	1	0	0	0	0	1	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0007	1317	1	0	0	1	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0008	1317	1	0	1	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	c0009	1317	1	1	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCFC2_chr2_75657705_75715915	1/1	c0001	2346	163	13	27	99	7	15	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0002	2346	120	20	20	61	3	16	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0003	2346	31	11	4	10	2	4	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0004	2346	31	29	2	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0005	2346	22	4	6	7	2	3	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0006	2346	5	1	2	0	2	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0007	2346	4	4	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0008	2346	4	0	0	4	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0009	2346	4	4	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0010	2346	3	3	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0011	2346	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0012	2346	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0013	2346	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0014	2346	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0015	2346	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0016	2346	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0017	2346	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0018	2346	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0019	2346	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0020	2346	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0021	2346	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0022	2346	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0023	2346	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0024	2346	1	0	0	0	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0025	2346	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0026	2346	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	c0027	2346	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCGR_chr17_81799150_81819008	1/1	c0001	1434	326	83	57	135	12	37	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0002	1434	51	7	11	31	2	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0003	1434	9	0	9	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0004	1434	7	0	3	0	4	0	copy fasta	GCGR	chr17	81799150	81819008