JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCGR_chr17_81799150_81819008	0/0	c0005	1434	2	2	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0006	1434	2	0	0	2	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0007	1434	1	0	1	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0008	1434	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0009	1434	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0010	1434	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0011	1434	1	0	0	1	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0012	1434	1	0	0	1	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0013	1434	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0015	1434	1	0	1	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0016	1434	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	c0017	1434	1	1	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCG_chr2_162137882_162157247	1/1	c0001	543	360	98	49	152	16	43	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	c0002	543	74	0	25	48	0	1	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	c0003	543	1	0	0	1	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	c0004	543	1	0	0	1	0	0	copy fasta	GCG	chr2	162137882	162157247
GCH1_chr14_54837017_54907826	1/1	c0001	753	342	85	66	136	14	39	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	c0002	753	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	c0003	753	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	c0004	753	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	c0005	753	1	0	0	0	0	1	copy fasta	GCH1	chr14	54837017	54907826
GCHFR_chr15_40759068_40772708	1/1	c0001	255	416	88	72	190	16	48	copy fasta	GCHFR	chr15	40759068	40772708
GCKR_chr2_27491839_27528684	0/1	c0001	1878	206	68	42	56	7	32	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	1/0	c0002	1878	93	9	18	54	5	6	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0003	1878	3	0	0	3	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0004	1878	3	0	0	3	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0005	1878	2	2	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0006	1878	2	0	1	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0007	1878	2	0	2	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0008	1878	2	0	0	1	0	1	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0009	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0010	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0011	1878	1	1	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0012	1878	1	1	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0013	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0014	1878	1	0	0	0	0	1	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0015	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0016	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0017	1878	1	0	1	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0018	1878	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	c0019	1878	1	1	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCK_chr7_44139275_44194439	1/1	c0001	1398	384	84	62	180	18	38	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0002	1398	3	3	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0003	1398	1	1	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0004	1398	1	1	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0005	1398	1	0	1	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0006	1398	1	0	1	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	c0007	1398	1	1	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCLC_chr6_53492341_53550101	1/1	c0001	1914	395	81	67	191	12	42	copy fasta	GCLC	chr6	53492341	53550101