JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCLC_chr6_53492341_53550101	0/0	c0002	1914	8	8	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0003	1914	5	0	0	5	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0004	1914	4	0	2	0	2	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0005	1914	3	3	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0006	1914	3	0	0	3	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0007	1914	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0008	1914	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0009	1914	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0010	1914	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0011	1914	1	0	1	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0012	1914	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0013	1914	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	c0014	1914	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLM_chr1_93880199_93914430	1/1	c0001	825	378	94	70	160	14	38	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	c0002	825	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	c0003	825	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	c0004	825	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	c0005	825	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCM1_chr6_53121961_53153841	1/1	c0001	1311	372	80	72	175	12	31	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0002	1311	14	10	4	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0003	1311	13	0	2	11	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0004	1311	7	0	1	6	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0005	1311	2	0	0	2	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0006	1311	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0007	1311	1	0	0	0	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0008	1311	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	c0009	1311	1	0	1	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM2_chr6_10868223_10887041	1/1	c0001	1521	367	73	64	172	16	40	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0002	1521	19	0	0	19	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0003	1521	13	13	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0004	1521	7	0	0	7	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0005	1521	4	3	1	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0006	1521	4	4	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0007	1521	2	0	0	0	2	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0008	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0009	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0010	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0011	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0012	1521	1	0	0	1	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0013	1521	1	0	1	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0014	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0015	1521	1	0	0	1	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0016	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	c0017	1521	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCN1_chr12_120122202_120199715	0/1	c0001	8016	113	18	10	71	2	11	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0002	8016	104	19	27	38	3	17	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	1/0	c0003	8016	18	0	9	3	3	2	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0004	8016	10	10	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0005	8016	8	6	0	1	0	1	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0006	8016	6	5	1	0	0	0	copy fasta	GCN1	chr12	120122202	120199715