JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCN1_chr12_120122202_120199715	0/0	c0007	8016	5	5	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0008	8016	5	0	0	5	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0009	8016	5	4	1	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0010	8016	4	0	0	4	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0011	8016	4	3	1	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0012	8016	3	0	0	3	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0013	8016	3	3	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0014	8016	2	2	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0015	8016	2	1	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0016	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0017	8016	1	0	1	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0018	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0019	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0020	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0021	8016	1	0	0	0	0	1	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0022	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0023	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0024	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0025	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0026	8016	1	0	0	0	1	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0027	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0028	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0029	8016	1	0	0	0	1	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0030	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0031	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0032	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0033	8016	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0034	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	c0035	8016	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCNA_chrX_71573437_71618583	1/1	c0001	2076	239	55	40	105	9	28	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0002	2076	6	4	2	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0003	2046	4	3	1	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0004	2106	4	1	0	3	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0005	2076	3	0	1	1	0	1	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0006	2109	2	2	0	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0007	2076	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0008	2076	1	0	0	0	0	1	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0009	2076	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0010	2065	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0011	2076	1	1	0	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0012	2076	1	0	1	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	c0013	2076	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNT1_chr9_76454182_76512416	1/1	c0001	1287	251	63	50	99	12	25	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0002	1287	108	20	21	46	5	16	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0003	1287	3	2	0	0	1	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0004	1287	2	0	0	0	0	2	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0005	1287	1	0	0	1	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0006	1287	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0007	1287	1	0	0	0	0	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0008	1287	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416