JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCNT1_chr9_76454182_76512416	0/0	c0009	1287	1	0	1	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	c0010	1287	1	1	0	0	0	0	copy fasta	GCNT1	chr9	76454182	76512416
GCNT2_chr6_10516351_10634368	1/1	c0001	1209	321	86	59	130	8	36	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	c0002	1209	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	c0003	1209	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10516351_10634368	0/0	c0004	284	1	0	1	0	0	0	copy fasta	GCNT2	chr6	10516351	10634368
GCNT2_chr6_10550809_10634368	1/1	c0001	1203	321	73	60	142	10	34	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0002	1203	12	4	4	1	2	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0003	1203	3	3	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0004	1203	3	3	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0005	1203	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0006	1203	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0008	1203	1	0	0	0	0	1	copy fasta	GCNT2	chr6	10550809	10634368
GCNT2_chr6_10550809_10634368	0/0	c0009	1222	1	0	0	1	0	0	copy fasta	GCNT2	chr6	10550809	10634368
GCNT3_chr15_59606783_59627723	1/0	c0001	1317	326	75	73	126	15	36	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0002	1317	88	8	0	68	1	11	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0003	1317	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0004	1317	2	2	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0005	1317	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0006	1317	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0007	1317	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0008	1317	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0009	1317	1	0	0	1	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0010	1317	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0011	1317	1	1	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0012	1317	1	0	1	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/0	c0013	1317	1	0	0	0	0	1	copy fasta	GCNT3	chr15	59606783	59627723
GCNT3_chr15_59606783_59627723	0/1	c0014	1317	1	0	0	0	0	0	copy fasta	GCNT3	chr15	59606783	59627723
GCNT4_chr5_75020346_75057558	1/1	c0001	1362	215	25	37	105	14	32	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	c0002	1362	133	37	27	55	2	12	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	c0003	1362	33	27	2	4	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCNT4_chr5_75020346_75057558	0/0	c0004	1362	1	1	0	0	0	0	copy fasta	GCNT4	chr5	75020346	75057558
GCSAML_chr1_247544134_247582690	1/1	c0001	408	410	96	72	174	18	48	copy fasta	GCSAML	chr1	247544134	247582690
GCSAML_chr1_247544134_247582690	0/0	c0002	408	2	0	2	0	0	0	copy fasta	GCSAML	chr1	247544134	247582690
GCSAM_chr3_112115839_112138248	1/1	c0001	537	392	94	71	162	17	46	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0002	537	11	0	0	9	0	2	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0003	537	5	0	1	4	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0004	537	5	0	0	5	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0005	537	4	3	1	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0006	537	2	0	1	0	1	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0007	537	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0008	537	1	0	0	1	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSAM_chr3_112115839_112138248	0/0	c0009	537	1	1	0	0	0	0	copy fasta	GCSAM	chr3	112115839	112138248
GCSH_chr16_81076945_81101395	0/1	c0001	522	227	42	48	98	13	25	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	1/0	c0002	522	93	26	6	52	0	8	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	c0003	522	18	12	0	6	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	c0004	522	11	6	4	0	1	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	c0005	522	2	1	1	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	c0006	522	1	1	0	0	0	0	copy fasta	GCSH	chr16	81076945	81101395