JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GCSH_chr16_81076945_81101395	0/0	c0007	522	1	0	1	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GCSH_chr16_81076945_81101395	0/0	c0008	522	1	0	0	0	0	1	copy fasta	GCSH	chr16	81076945	81101395
GC_chr4_71736697_71789079	0/0	c0001	1425	121	35	12	66	0	8	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/1	c0002	1425	99	10	20	48	6	14	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0003	1425	81	9	14	47	1	10	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0004	1425	47	19	4	24	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0005	1425	14	13	1	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0006	1425	4	0	0	4	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0007	1425	3	0	0	3	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0008	1425	3	3	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0009	1425	2	2	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0010	1425	2	0	1	0	1	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0011	1425	2	2	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	1/0	c0012	1425	2	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0013	1425	1	0	0	1	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0015	1425	1	0	0	1	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0016	1425	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0017	1425	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0018	1425	1	0	0	1	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0019	1425	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	c0020	1425	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GDAP1L1_chr20_44242308_44285947	1/1	c0001	1104	386	84	55	185	16	44	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	c0002	1104	3	3	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	c0003	1104	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	c0004	1104	1	0	1	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	c0005	1104	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1_chr8_74345403_74371876	1/1	c0001	1077	347	83	70	154	8	30	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	c0002	1077	81	6	10	52	6	7	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	c0003	1077	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	c0004	1077	1	0	0	0	0	1	copy fasta	GDAP1	chr8	74345403	74371876
GDAP2_chr1_117858485_117934621	1/1	c0001	1494	335	60	54	163	12	44	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0002	1494	8	7	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0003	1494	8	8	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0004	1494	5	5	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0005	1494	4	4	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0006	1494	2	0	0	2	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0007	1494	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	c0008	1494	1	0	1	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDA_chr9_72144440_72257224	1/1	c0001	1365	308	79	61	124	12	30	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	c0002	1365	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	c0003	1365	1	0	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	c0004	1365	1	1	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDE1_chr16_19496693_19527098	1/1	c0001	996	372	82	66	173	8	41	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	c0002	996	13	0	0	13	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	c0003	996	10	8	2	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	c0004	996	2	2	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	c0005	996	1	0	0	0	0	1	copy fasta	GDE1	chr16	19496693	19527098
GDF10_chr10_47295197_47318577	1/1	c0001	1437	327	67	58	155	12	33	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0002	1437	37	0	9	23	0	5	copy fasta	GDF10	chr10	47295197	47318577