JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GDF10_chr10_47295197_47318577	0/0	c0003	1437	10	9	1	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0004	1437	5	4	1	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0005	1437	5	5	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0006	1437	2	2	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0007	1437	2	2	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0008	1437	2	2	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0009	1437	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0010	1437	1	0	1	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0012	1437	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0013	1437	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0014	1437	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0015	1437	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	c0016	1437	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF11_chr12_55738122_55762264	1/1	c0001	1224	351	87	56	163	8	35	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	c0002	1227	12	0	0	11	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	c0003	1224	2	0	0	2	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	c0004	1236	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF15_chr19_18381158_18394176	1/0	c0001	927	122	12	16	71	7	15	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0002	927	116	13	26	65	4	8	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0003	927	84	7	13	44	5	15	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0004	927	34	31	3	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/1	c0005	927	32	12	11	0	2	6	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0006	927	14	13	1	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0007	927	5	3	2	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0008	927	4	0	0	4	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0009	927	3	3	0	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0010	927	2	0	0	0	0	2	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0011	927	2	2	0	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0012	927	2	2	0	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0013	927	2	0	0	2	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0014	927	1	0	1	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	c0015	927	1	0	1	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF1_chr19_18863545_18901158	1/0	c0001	1119	264	84	31	104	10	34	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/1	c0002	1119	78	1	26	38	3	9	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0003	1122	22	3	1	16	1	1	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0004	1119	7	0	0	7	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0005	1119	2	2	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0006	1122	2	0	2	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0007	1119	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0009	1104	1	0	0	1	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0010	1119	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/0	c0011	1119	1	1	0	0	0	0	copy fasta	GDF1	chr19	18863545	18901158
GDF2_chr10_47317454_47332588	1/1	c0001	1290	410	89	74	186	16	43	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0002	1290	3	3	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0003	1290	2	0	0	2	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0004	1290	2	0	0	2	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0005	1290	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0006	1290	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588