JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GDF2_chr10_47317454_47332588	0/0	c0007	1290	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0008	1290	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0009	1290	1	1	0	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0010	1257	1	0	1	0	0	0	copy fasta	GDF2	chr10	47317454	47332588
GDF2_chr10_47317454_47332588	0/0	c0011	1290	1	0	0	0	0	1	copy fasta	GDF2	chr10	47317454	47332588
GDF3_chr12_7684784_7700775	1/0	c0001	1095	371	79	68	181	11	31	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/1	c0002	1095	71	16	8	28	2	16	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0003	1095	16	0	0	15	1	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0004	1095	5	0	2	0	2	1	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0005	1119	1	0	0	1	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0006	1095	1	1	0	0	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0008	1095	1	0	0	0	0	1	copy fasta	GDF3	chr12	7684784	7700775
GDF3_chr12_7684784_7700775	0/0	c0009	1095	1	0	0	0	0	1	copy fasta	GDF3	chr12	7684784	7700775
GDF5_chr20_35428347_35443228	0/1	c0001	1506	195	41	38	82	6	27	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0002	1506	75	19	16	23	6	11	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	1/0	c0003	1506	66	24	6	25	2	8	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0004	1506	14	11	3	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0005	1506	5	0	0	5	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0006	1506	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0007	1506	1	0	1	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0008	1506	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0009	1506	1	1	0	0	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF5_chr20_35428347_35443228	0/0	c0010	1506	1	0	0	1	0	0	copy fasta	GDF5	chr20	35428347	35443228
GDF6_chr8_96137333_96165806	1/1	c0001	1368	357	89	72	144	11	39	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0002	1368	2	2	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0003	1368	2	0	0	2	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0004	1368	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0005	1368	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0006	1368	1	0	0	0	1	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0007	1368	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0008	1368	1	0	0	1	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0009	1368	1	1	0	0	0	0	copy fasta	GDF6	chr8	96137333	96165806
GDF6_chr8_96137333_96165806	0/0	c0010	1368	1	0	0	0	0	1	copy fasta	GDF6	chr8	96137333	96165806
GDF7_chr2_20662144_20684243	0/0	c0001	1362	279	43	61	137	13	25	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/1	c0002	1371	57	9	12	29	1	5	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0003	1362	29	0	5	18	2	4	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0004	1374	12	0	0	11	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0005	1362	7	4	1	2	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0006	1353	7	7	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0007	1365	6	2	1	0	0	3	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0008	1362	5	3	2	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0009	1359	5	5	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0010	1359	4	3	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0011	1350	4	3	1	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0012	1362	3	3	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0013	1380	2	2	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0014	1371	2	0	0	0	0	2	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0015	1365	2	2	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0016	1365	2	0	0	0	0	2	copy fasta	GDF7	chr2	20662144	20684243