JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GDF7_chr2_20662144_20684243	0/0	c0017	1362	2	2	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0018	1362	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0019	1363	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0020	1377	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0021	1374	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0022	1368	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0023	1362	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0024	1362	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0025	1362	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0026	1362	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0027	1362	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0028	1350	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0029	1359	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	1/0	c0030	1353	1	0	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	c0031	1365	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF9_chr5_132856185_132871469	1/0	c0001	1365	219	41	34	119	7	17	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/1	c0002	1365	176	37	31	72	8	27	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0003	1365	56	18	12	25	1	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0004	1365	5	0	0	5	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0005	1365	2	0	0	2	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0006	1365	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0007	1365	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0008	1365	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0009	1365	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0010	1365	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	c0011	1365	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDI1_chrX_154432154_154448467	1/1	c0001	1344	193	31	35	91	6	28	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0002	1344	78	45	15	13	1	4	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0003	1344	6	0	6	0	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0004	1343	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0005	1343	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0006	1343	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0007	1344	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0008	1376	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	c0009	1342	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI2_chr10_5760223_5818434	1/1	c0001	1338	328	72	40	164	15	35	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	c0002	1338	65	6	26	29	1	3	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	c0003	1338	2	0	0	0	0	2	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	c0004	1338	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	c0005	1338	1	0	0	1	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	c0006	1338	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDNF_chr5_37807677_37845041	1/1	c0001	636	411	82	69	205	15	38	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	c0002	636	14	13	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	c0003	636	2	1	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	c0004	636	1	0	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	c0005	636	1	0	0	1	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	c0006	636	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDPD1_chr17_59215511_59280970	1/1	c0001	945	307	82	51	129	8	35	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	c0002	945	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	c0003	945	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970