JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GDPD1_chr17_59215511_59280970	0/0	c0004	945	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	c0005	945	1	0	1	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	c0006	945	1	0	0	0	0	1	copy fasta	GDPD1	chr17	59215511	59280970
GDPD2_chrX_70418314_70438381	0/1	c0001	1620	246	29	49	128	10	29	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	1/0	c0002	1620	43	20	3	17	1	1	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0003	1620	11	11	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0004	1620	4	0	2	0	2	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0005	1620	3	1	2	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0006	1620	2	2	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0007	1620	1	0	1	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0008	1620	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0009	1620	1	1	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0010	1620	1	1	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0011	1621	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0012	1618	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0013	1620	1	1	0	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0014	1620	1	0	0	0	0	1	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	c0015	1619	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD3_chr16_30099810_30118537	1/1	c0001	957	379	90	70	160	18	39	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0002	957	4	0	0	4	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0003	957	3	0	0	0	0	3	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0004	957	1	0	0	1	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0005	957	1	1	0	0	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0006	957	1	0	0	1	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	c0007	957	1	1	0	0	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD4_chr11_77211558_77306686	1/1	c0001	1563	164	30	33	83	3	13	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0002	1563	96	41	9	42	1	3	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0003	1564	78	3	14	48	3	10	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0004	1564	3	2	1	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0005	1563	3	3	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0006	1564	2	0	1	0	1	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0008	1563	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0009	1563	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	c0010	1564	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD5_chr11_75429640_75530941	0/0	c0001	1818	160	20	39	78	7	16	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	1/1	c0002	1818	86	33	17	18	6	10	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0003	1818	57	28	7	18	1	3	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0004	1818	4	4	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0005	1818	3	0	0	3	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0006	1818	2	0	0	2	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0007	1818	2	2	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0008	1818	2	0	1	0	0	1	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0009	1818	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0010	1818	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0011	1818	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0012	1818	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0013	1818	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	c0014	1818	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPGP1_chr15_90229209_90250811	0/0	c0001	1158	282	35	57	154	6	30	copy fasta	GDPGP1	chr15	90229209	90250811