JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GDPGP1_chr15_90229209_90250811	0/1	c0002	1158	67	1	11	44	3	7	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0003	1158	37	20	11	0	4	2	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0004	1158	15	13	2	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0005	1158	11	11	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0006	1158	10	10	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0007	1158	2	0	0	2	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0008	1158	2	1	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	1/0	c0009	1158	1	0	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0010	1158	1	0	0	0	1	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0011	1158	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0012	1158	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0013	1158	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0014	1158	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0015	1158	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0016	1158	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0017	1158	1	0	0	1	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0018	1158	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0019	1158	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	c0020	1158	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GEMIN2_chr14_39109323_39141973	1/1	c0001	810	422	91	76	195	16	42	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	c0002	810	1	0	0	1	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	c0003	810	1	1	0	0	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN4_chr17_739421_757264	0/0	c0001	3177	123	35	16	57	6	9	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/1	c0002	3177	64	4	20	28	2	9	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	1/0	c0003	3177	52	0	14	24	5	8	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0004	3177	38	1	6	28	0	3	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0005	3177	35	0	3	26	2	4	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0006	3177	29	7	4	11	0	7	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0007	3177	15	14	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0008	3177	7	0	0	7	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0009	3177	7	1	3	0	0	3	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0010	3177	6	5	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0011	3177	4	4	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0012	3177	4	0	0	4	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0013	3177	4	0	1	3	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0014	3177	3	3	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0015	3177	3	0	0	3	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0016	3177	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0017	3177	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0018	3177	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0019	3177	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0020	3177	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0021	3177	2	0	0	0	0	2	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0022	3177	2	0	0	0	2	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0023	3177	2	0	1	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0024	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0025	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0026	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0027	3177	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0028	3177	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264