JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GEMIN4_chr17_739421_757264	0/0	c0029	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0030	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0031	3177	1	0	0	0	1	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0032	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0033	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0034	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0035	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0036	3177	1	0	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0037	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0038	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0039	3177	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0040	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0041	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0042	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0043	3177	1	0	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0044	3177	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0045	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0046	3177	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	c0047	3177	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN5_chr5_154882411_154943211	0/1	c0001	4527	232	40	49	99	13	30	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0002	4527	32	6	11	9	3	3	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	1/0	c0003	4527	17	3	2	10	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0004	4527	9	9	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0005	4527	7	7	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0006	4527	6	6	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0007	4527	4	0	0	4	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0008	4527	3	2	1	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0009	4527	3	3	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0010	4527	2	0	0	2	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0011	4527	2	0	0	1	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0012	4527	2	1	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0013	4527	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0014	4527	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0015	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0016	4527	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0017	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0018	4527	1	0	1	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0019	4527	1	0	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0020	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0021	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0022	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0023	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0024	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0025	4527	1	0	0	0	0	1	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0026	4527	1	0	1	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0027	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0028	4527	1	1	0	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0029	4527	1	0	1	0	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0030	4527	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211
GEMIN5_chr5_154882411_154943211	0/0	c0031	4527	1	0	0	1	0	0	copy fasta	GEMIN5	chr5	154882411	154943211