JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GEMIN6_chr2_38773210_38790002	1/1	c0001	504	324	93	61	121	13	34	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0002	504	83	0	9	63	2	9	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0003	504	1	0	0	0	0	1	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0004	504	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0005	504	1	0	0	0	1	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0006	504	1	1	0	0	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN6_chr2_38773210_38790002	0/0	c0007	504	1	0	0	1	0	0	copy fasta	GEMIN6	chr2	38773210	38790002
GEMIN7_chr19_45074260_45096518	1/0	c0001	396	418	100	84	173	14	46	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/1	c0002	396	1	0	0	0	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN7_chr19_45074260_45096518	0/0	c0003	412	1	0	0	1	0	0	copy fasta	GEMIN7	chr19	45074260	45096518
GEMIN8_chrX_14001726_14034892	1/1	c0001	729	249	69	53	89	9	27	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	c0002	729	19	0	2	16	0	1	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	c0003	729	2	0	0	0	0	2	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	c0004	735	1	0	0	1	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	c0005	729	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEMIN8_chrX_14001726_14034892	0/0	c0006	729	1	1	0	0	0	0	copy fasta	GEMIN8	chrX	14001726	14034892
GEM_chr8_94244253_94267319	1/1	c0001	891	326	65	64	153	9	33	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0002	891	37	8	2	15	5	7	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0003	891	20	16	3	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0004	891	18	0	4	13	0	1	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0005	891	2	2	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0006	891	2	0	0	0	0	2	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0007	891	2	2	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0008	891	1	0	0	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0009	891	1	1	0	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0010	891	1	0	0	1	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0011	891	1	0	1	0	0	0	copy fasta	GEM	chr8	94244253	94267319
GEM_chr8_94244253_94267319	0/0	c0012	891	1	0	0	0	0	1	copy fasta	GEM	chr8	94244253	94267319
GEN1_chr2_17749138_17793946	0/0	c0001	2727	131	6	22	76	8	19	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0002	2727	49	19	14	5	7	4	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0003	2727	37	21	6	7	1	2	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0004	2722	30	2	8	17	1	2	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0005	2727	16	0	1	15	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0006	2727	13	13	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0007	2727	9	9	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0008	2727	7	6	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0009	2727	6	0	3	0	0	3	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0010	2727	6	6	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0011	2727	3	0	0	0	0	3	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0012	2727	2	2	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0013	2727	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0014	2727	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0015	2727	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0016	2727	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0017	2727	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0018	2727	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0019	2727	1	0	0	0	1	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0020	2727	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	c0021	2727	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GET1_chr21_39375326_39402889	1/1	c0001	525	333	81	68	128	18	36	copy fasta	GET1	chr21	39375326	39402889