JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GET1_chr21_39375326_39402889	0/0	c0002	525	5	5	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET3_chr19_12732497_12753323	1/1	c0001	1047	277	90	68	81	12	24	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0002	1047	2	2	0	0	0	0	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0003	1047	2	2	0	0	0	0	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0004	1047	2	2	0	0	0	0	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0005	1047	1	0	0	1	0	0	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0006	1047	1	0	0	1	0	0	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	c0007	1047	1	0	0	1	0	0	copy fasta	GET3	chr19	12732497	12753323
GET4_chr7_871554_901436	1/0	c0001	984	237	53	44	107	8	24	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0002	984	86	5	12	55	4	10	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0003	984	19	6	10	0	1	2	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0004	984	9	9	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0005	984	5	3	2	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0006	984	5	4	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0007	984	3	0	0	3	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0008	984	3	0	2	0	0	1	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/1	c0009	984	3	0	0	0	1	1	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0010	984	3	3	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0011	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0012	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0013	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0014	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0015	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0016	984	1	0	0	1	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0017	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0018	984	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0019	984	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0020	984	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	c0021	984	1	1	0	0	0	0	copy fasta	GET4	chr7	871554	901436
GFAP_chr17_44898159_44920500	1/1	c0001	1299	340	71	59	157	11	40	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0002	1299	41	2	6	26	3	4	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0003	1299	23	16	4	0	0	3	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0004	1299	6	0	4	0	1	1	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0005	1299	3	3	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0006	1299	2	2	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0008	1299	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0009	1299	1	0	0	0	1	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0010	1299	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0011	1299	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0012	1299	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0013	1299	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0014	1299	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	c0015	1299	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFER_chr16_1979193_1992749	1/0	c0001	618	308	45	57	145	16	44	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	c0002	618	103	45	10	45	0	3	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/1	c0003	618	10	0	6	0	2	1	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	c0004	618	2	2	0	0	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	c0005	605	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	c0006	618	1	0	1	0	0	0	copy fasta	GFER	chr16	1979193	1992749