JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GFER_chr16_1979193_1992749	0/0	c0007	618	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFI1B_chr9_132973694_132996687	1/1	c0001	993	457	89	84	221	16	45	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0002	993	4	4	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0003	993	3	3	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0004	993	2	0	0	0	0	2	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0005	993	2	0	0	0	0	2	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0006	993	2	0	0	2	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0007	993	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0008	993	1	0	0	0	0	1	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0009	993	1	0	0	1	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0010	993	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0011	993	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	c0012	993	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1_chr1_92468043_92491925	0/1	c0001	1269	303	76	69	117	9	31	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	1/0	c0002	1269	12	0	2	4	5	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0003	1269	9	9	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0004	1269	3	1	2	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0005	1269	3	3	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0006	1269	3	1	0	0	0	2	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0007	1269	3	0	2	0	1	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0008	1290	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0010	1269	1	0	0	0	1	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0011	1269	1	0	0	1	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0012	1269	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	c0013	1269	1	0	0	0	0	1	copy fasta	GFI1	chr1	92468043	92491925
GFM1_chr3_158639527_158700581	0/0	c0001	2256	214	65	31	87	11	20	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	1/1	c0002	2256	135	13	27	69	7	17	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0003	2256	7	6	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0004	2256	3	1	1	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0005	2256	3	0	0	3	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0006	2245	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0007	2256	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0008	2256	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0009	2256	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0010	2256	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0011	2256	1	0	0	0	0	1	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0012	2256	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0013	2256	1	0	0	1	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0014	2256	1	1	0	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM1_chr3_158639527_158700581	0/0	c0015	2256	1	0	1	0	0	0	copy fasta	GFM1	chr3	158639527	158700581
GFM2_chr5_74716206_74772117	1/0	c0001	2340	198	25	42	95	9	26	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0002	2334	73	19	16	33	1	4	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/1	c0003	2334	31	9	10	2	4	5	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0004	2340	13	0	0	13	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0005	2334	13	13	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0006	2334	11	11	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0007	2334	7	5	2	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0008	2334	4	0	2	2	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0009	2334	4	4	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117