JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GFM2_chr5_74716206_74772117	0/0	c0010	2340	3	0	0	3	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0011	2340	2	0	0	2	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0012	2334	2	1	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0013	2334	2	1	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0014	2340	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0015	2334	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0016	2334	1	0	0	0	0	1	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0017	2334	1	1	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0018	2340	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0019	2334	1	1	0	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0020	2340	1	0	0	1	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0021	2340	1	0	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFM2_chr5_74716206_74772117	0/0	c0022	2340	1	0	1	0	0	0	copy fasta	GFM2	chr5	74716206	74772117
GFOD1_chr6_13352830_13492600	1/1	c0001	1173	212	76	46	66	10	12	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	c0002	1173	10	8	2	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	c0003	1173	3	3	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	c0004	1173	3	3	0	0	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD1_chr6_13352830_13492600	0/0	c0005	1173	2	0	0	2	0	0	copy fasta	GFOD1	chr6	13352830	13492600
GFOD2_chr16_67669536_67724316	1/1	c0001	1158	175	76	43	28	3	23	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	c0002	1158	3	0	3	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	c0003	1158	3	0	0	0	0	3	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	c0004	1158	2	0	1	0	1	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	c0005	1158	2	2	0	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFOD2_chr16_67669536_67724316	0/0	c0006	1158	1	0	1	0	0	0	copy fasta	GFOD2	chr16	67669536	67724316
GFPT1_chr2_69314780_69392227	1/1	c0001	2100	318	88	57	129	10	32	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	c0002	2100	44	2	0	39	0	3	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	c0003	2100	1	0	1	0	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	c0004	2100	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	c0005	2100	1	0	0	1	0	0	copy fasta	GFPT1	chr2	69314780	69392227
GFPT1_chr2_69314780_69392227	0/0	c0006	2100	1	0	0	0	0	1	copy fasta	GFPT1	chr2	69314780	69392227
GFPT2_chr5_180295698_180358336	1/1	c0001	2049	90	28	24	12	9	15	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0002	2049	89	4	11	61	3	10	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0003	2049	72	9	13	41	3	6	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0004	2049	60	14	10	27	1	8	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0005	2049	57	29	5	22	0	1	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0006	2049	14	0	1	10	1	2	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0007	2049	6	1	0	4	1	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0008	2049	3	0	0	1	0	2	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0009	2049	3	3	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0010	2049	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0011	2049	2	0	2	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0012	2049	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0013	2049	2	0	0	2	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0014	2049	2	0	0	2	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0015	2049	2	2	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0016	2039	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0017	2049	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0018	2049	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0019	2049	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFPT2_chr5_180295698_180358336	0/0	c0020	2049	1	0	0	1	0	0	copy fasta	GFPT2	chr5	180295698	180358336