JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GFPT2_chr5_180295698_180358336	0/0	c0021	2049	1	1	0	0	0	0	copy fasta	GFPT2	chr5	180295698	180358336
GFRA1_chr10_116051925_116278206	1/1	c0001	1398	102	45	17	32	0	6	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0002	1398	68	10	14	33	3	8	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0003	1398	19	6	5	7	1	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0004	1398	9	1	2	5	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0005	1398	4	3	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0006	1398	3	3	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0007	1398	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0008	1398	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0009	1398	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0010	1398	1	0	1	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0012	1398	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0013	1398	1	0	0	1	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0014	1398	1	0	0	0	0	1	copy fasta	GFRA1	chr10	116051925	116278206
GFRA1_chr10_116051925_116278206	0/0	c0015	1398	1	1	0	0	0	0	copy fasta	GFRA1	chr10	116051925	116278206
GFRA2_chr8_21685398_21793875	1/0	c0001	1395	126	31	18	42	10	24	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/1	c0002	1395	84	24	14	31	4	10	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0003	1395	24	1	7	13	0	3	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0004	1395	14	3	3	7	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0005	1395	14	0	2	11	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0006	1395	12	12	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0007	1395	8	3	0	5	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0008	1395	8	0	0	8	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0009	1395	3	3	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0010	1395	3	0	0	3	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0011	1395	2	1	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0012	1395	2	2	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0013	1395	2	2	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0014	1395	2	2	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0015	1395	2	2	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0016	1395	2	1	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0017	1395	2	0	0	2	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0018	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0019	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0020	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0021	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0022	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0023	1395	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0024	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0025	1395	1	1	0	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0026	1395	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0027	1395	1	0	0	1	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0028	1395	1	0	0	0	0	1	copy fasta	GFRA2	chr8	21685398	21793875
GFRA2_chr8_21685398_21793875	0/0	c0029	1395	1	0	1	0	0	0	copy fasta	GFRA2	chr8	21685398	21793875
GFRA3_chr5_138247380_138279621	1/1	c0001	1203	364	79	65	164	14	40	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	c0002	1203	6	5	1	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	c0003	1203	2	0	0	0	2	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	c0004	1203	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	c0005	1203	1	1	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621