JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GFRA3_chr5_138247380_138279621	0/0	c0006	1203	1	1	0	0	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA3_chr5_138247380_138279621	0/0	c0007	1203	1	0	0	1	0	0	copy fasta	GFRA3	chr5	138247380	138279621
GFRA4_chr20_3654248_3668399	1/0	c0001	810	166	46	20	77	7	15	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/1	c0002	810	151	3	34	83	5	25	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0003	810	96	28	12	44	6	6	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0004	810	16	14	2	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0005	810	8	1	7	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0006	810	3	3	0	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0007	810	2	0	0	2	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0008	810	1	0	0	0	0	1	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0009	810	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0010	810	1	0	1	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0011	810	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0012	810	1	1	0	0	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0013	810	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0014	810	1	0	0	0	0	1	copy fasta	GFRA4	chr20	3654248	3668399
GFRA4_chr20_3654248_3668399	0/0	c0015	810	1	0	0	1	0	0	copy fasta	GFRA4	chr20	3654248	3668399
GFRAL_chr6_55322469_55407493	0/1	c0001	1185	182	24	41	100	6	10	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0002	1185	80	18	12	33	2	15	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0003	1185	67	22	7	24	2	12	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	1/0	c0004	1185	44	19	6	13	4	1	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0005	1185	8	8	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0006	1185	1	0	1	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0007	1185	1	0	1	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0008	1185	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0009	1185	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFRAL_chr6_55322469_55407493	0/0	c0010	1185	1	1	0	0	0	0	copy fasta	GFRAL	chr6	55322469	55407493
GFUS_chr8_143607618_143622549	0/0	c0001	966	297	85	41	138	5	28	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/1	c0002	966	107	6	35	36	9	20	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	c0003	966	4	4	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	c0004	966	3	2	1	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	c0005	966	2	0	0	2	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	c0006	966	1	1	0	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFUS_chr8_143607618_143622549	0/0	c0007	966	1	0	1	0	0	0	copy fasta	GFUS	chr8	143607618	143622549
GFY_chr19_49420388_49433987	0/1	c0001	1557	171	58	32	48	13	19	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	1/0	c0002	1557	146	6	18	109	2	10	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0003	1557	82	11	22	39	1	9	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0004	1557	16	0	0	8	0	8	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0005	1557	11	7	4	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0006	1557	4	3	1	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0007	1557	4	0	0	4	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0008	1557	3	3	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0009	1557	2	2	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0010	1557	2	2	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0011	1557	2	0	0	2	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0013	1557	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0014	1557	1	0	0	0	0	1	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0015	1557	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0016	1557	1	0	0	0	0	1	copy fasta	GFY	chr19	49420388	49433987