JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GFY_chr19_49420388_49433987	0/0	c0017	1557	1	0	1	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GFY_chr19_49420388_49433987	0/0	c0018	1557	1	1	0	0	0	0	copy fasta	GFY	chr19	49420388	49433987
GGA1_chr22_37603834_37638564	1/0	c0001	1920	331	67	69	143	13	38	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0002	1920	7	6	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0003	1920	4	0	0	4	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0004	1920	4	3	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0005	1920	4	4	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0006	1920	3	3	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/1	c0007	1920	2	0	1	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0008	1920	2	2	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0009	1920	2	0	2	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0010	1920	2	2	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0011	1920	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0012	1920	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0013	1920	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0014	1920	1	0	0	0	1	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0015	1920	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0016	1920	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0017	1920	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0018	1920	1	1	0	0	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA1_chr22_37603834_37638564	0/0	c0019	1920	1	0	0	1	0	0	copy fasta	GGA1	chr22	37603834	37638564
GGA2_chr16_23458542_23515494	0/1	c0001	1842	132	42	37	32	8	12	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	1/0	c0002	1842	112	36	22	37	4	12	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0003	1842	3	3	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0004	1842	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0005	1842	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0006	1842	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0007	1842	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0008	1842	1	0	1	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0009	1842	1	1	0	0	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA2_chr16_23458542_23515494	0/0	c0010	1842	1	0	0	1	0	0	copy fasta	GGA2	chr16	23458542	23515494
GGA3_chr17_75231599_75266606	1/1	c0001	2172	261	48	62	101	14	34	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0002	2172	55	24	8	13	0	10	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0003	2172	16	0	0	16	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0004	2172	9	8	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0005	2175	6	6	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0006	2172	5	5	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0007	2172	3	0	0	3	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0008	2172	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0009	2172	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0010	2172	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0011	2172	1	0	1	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0013	2172	1	0	0	0	0	1	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0014	2172	1	1	0	0	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0015	2172	1	0	0	1	0	0	copy fasta	GGA3	chr17	75231599	75266606
GGA3_chr17_75231599_75266606	0/0	c0016	2172	1	0	0	0	0	1	copy fasta	GGA3	chr17	75231599	75266606
GGACT_chr13_100525180_100593789	1/1	c0001	462	367	86	52	177	16	34	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	c0002	462	6	0	0	6	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGACT_chr13_100525180_100593789	0/0	c0003	462	2	0	2	0	0	0	copy fasta	GGACT	chr13	100525180	100593789