JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GGACT_chr13_100525180_100593789	0/0	c0004	462	1	0	0	1	0	0	copy fasta	GGACT	chr13	100525180	100593789
GGCT_chr7_30491621_30509829	1/1	c0001	567	444	88	80	210	16	48	copy fasta	GGCT	chr7	30491621	30509829
GGCX_chr2_85539720_85566493	1/1	c0001	2277	176	12	42	85	8	27	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0002	2277	134	36	11	68	7	12	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0003	2277	46	13	10	14	0	9	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0004	2277	22	18	4	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0005	2277	10	10	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0006	2277	8	0	4	2	2	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0007	2277	3	0	0	3	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0008	2277	2	2	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0009	2277	2	0	0	2	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0010	2277	2	0	2	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0012	2277	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0013	2277	1	0	0	0	1	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0014	2277	1	0	1	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGCX_chr2_85539720_85566493	0/0	c0015	2277	1	1	0	0	0	0	copy fasta	GGCX	chr2	85539720	85566493
GGH_chr8_63010079_63043806	1/0	c0001	957	309	68	49	148	14	29	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/1	c0002	957	58	5	18	28	0	6	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0003	957	43	7	5	23	2	6	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0004	957	6	0	0	6	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0005	957	5	5	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0006	957	1	0	0	0	0	1	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0007	957	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0008	957	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0009	957	1	0	0	1	0	0	copy fasta	GGH	chr8	63010079	63043806
GGH_chr8_63010079_63043806	0/0	c0010	957	1	1	0	0	0	0	copy fasta	GGH	chr8	63010079	63043806
GGNBP2_chr17_36539919_36594848	0/1	c0001	2094	229	60	41	99	6	22	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0002	2094	123	24	22	60	6	11	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0003	2094	1	0	0	0	0	1	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0004	2094	1	1	0	0	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0005	2094	1	0	0	1	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0006	2094	1	1	0	0	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGNBP2_chr17_36539919_36594848	0/0	c0007	2094	1	0	1	0	0	0	copy fasta	GGNBP2	chr17	36539919	36594848
GGN_chr19_38379267_38393034	1/1	c0001	1959	221	51	51	81	10	26	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0002	1983	49	5	5	39	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0003	1959	48	1	10	28	1	8	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0004	1959	18	0	1	17	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0005	1983	14	0	0	14	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0006	1983	6	6	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0007	1983	3	3	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0008	1983	3	1	1	0	0	1	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0009	1959	3	3	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0010	1959	3	0	0	3	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0011	1959	3	0	1	0	2	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0012	1959	2	0	1	0	1	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0013	1983	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0014	1983	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0015	1989	2	2	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0016	1959	2	0	2	0	0	0	copy fasta	GGN	chr19	38379267	38393034