JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GGN_chr19_38379267_38393034	0/0	c0017	1983	1	0	1	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0018	1959	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0019	1959	1	0	1	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0020	1959	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0021	1983	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0022	1959	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0023	1959	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0024	1983	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0025	1959	1	0	0	0	0	1	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0026	1959	1	0	0	1	0	0	copy fasta	GGN	chr19	38379267	38393034
GGN_chr19_38379267_38393034	0/0	c0027	1959	1	1	0	0	0	0	copy fasta	GGN	chr19	38379267	38393034
GGPS1_chr1_235323570_235349532	1/1	c0001	903	370	71	72	171	10	44	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	c0002	903	20	19	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	c0003	903	1	0	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	c0004	903	1	0	0	1	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGT1_chr22_24598193_24633996	1/0	c0001	1710	234	18	41	137	13	24	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0002	1710	145	44	29	57	4	11	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0003	1710	7	6	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0004	1710	7	7	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0005	1710	7	5	2	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0006	1710	7	2	0	0	0	5	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0007	1710	3	3	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0008	1710	3	0	3	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0009	1710	2	0	2	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/1	c0010	1710	2	0	0	0	0	1	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0011	1710	2	2	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0012	1710	1	0	0	0	0	1	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0013	1710	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0014	1710	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0015	1710	1	0	0	0	1	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0016	1710	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0017	1710	1	0	0	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	c0018	1710	1	0	0	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT5_chr22_24214660_24250082	1/1	c0001	1761	212	34	29	113	12	22	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0002	1761	97	22	18	46	2	9	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0003	1761	44	3	8	22	2	9	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0004	1761	15	14	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0005	1761	6	0	4	0	2	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0006	1761	5	5	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0007	1761	4	3	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0008	1761	4	0	3	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0009	1761	3	2	0	0	0	1	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0010	1761	3	3	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0011	1761	2	0	0	0	0	2	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0012	1761	2	0	2	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0013	1761	2	2	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0014	1761	2	0	0	2	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0015	1761	2	2	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0016	1761	1	0	0	1	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	c0017	1761	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082